[molpro-user] Parallel Molpro 2002.6 on ALTIX 350

[Lisa M. Perez]

I had this same problem.  I had an SGI representative here and he 
found the library in their MPI software so, you can compile GA using the 
MPI option only.  If anyone knows how to get the fastbcopy library for sgi 
ALTIX, I would be interested!

Lisa

On Wed, 14 Sep 2005, Jacek Klos wrote:

>
> Hi Ross,
> I tried this gmake options as you wrote and I get the following error
> during gmake of GA:
> IPO Error: unresolved : _fastbcopy
>        Referenced in libarmci.a(armci.o)
>        Referenced in libarmci.a(message.o)
>        Referenced in libarmci.a(mutex.o)
>        Referenced in libarmci.a(strided.o)
>        Referenced in libarmci.a(vector.o)
>        Referenced in libarmci.a(rmw.o)
>        Referenced in libarmci.a(memlock.o)
>        Referenced in libarmci.a(request.o)
> ../../lib/LINUX64/libarmci.a(strided.o)(.text+0x24b2): In function 
> `armci_copy_2D':
> : undefined reference to `_fastbcopy'
> ../../lib/LINUX64/libarmci.a(strided.o)(.text+0x2532): In function 
> `armci_copy_2D':
> : undefined reference to `_fastbcopy'
> ../../lib/LINUX64/libarmci.a(strided.o)(.text+0x2572): In function 
> `armci_copy_2D':
> : undefined reference to `_fastbcopy'
> ../../lib/LINUX64/libarmci.a(strided.o)(.text+0x2632): In function 
> `armci_copy_2D':
> : undefined reference to `_fastbcopy'
> ../../lib/LINUX64/libarmci.a(strided.o)(.text+0x2692): In function 
> `armci_copy_2D':
> : undefined reference to `_fastbcopy'
> ../../lib/LINUX64/libarmci.a(strided.o)(.text+0x2712): more undefined 
> references to `_fastbcopy' follow
> gmake[2]: *** [test.x] Error 1
> rm util.o ffflush.o test.o
> gmake[2]: Leaving directory `/opt/GlobalArray3.3.3/g/global/testing'
> gmake[1]: *** [test.x] Error 1
> gmake[1]: Leaving directory `/opt/GlobalArray3.3.3/g/global'
> gmake: *** [test] Error 2
>
> Did you run into this error?
> Thank you
> Jacek
>
> Ross wrote------
> Hi Jacek,
>
> If you want to use the TCGMSG-based version of the GA, you will need to
> build with
>
> make TARGET=LINUX64 CC=icc FC=ifort
>
> Cheers,
> Ross
>
> -----Original Message-----
> From: owner-molpro-user at molpro1.chem.cf.ac.uk [mailto:owner-molpro-
> user at molpro1.chem.cf.ac.uk] On Behalf Of Jacek Klos
> Sent: 14 September 2005 17:28
> To: molpro-user at molpro.net
> Subject: [molpro-user] Parallel Molpro 2002.6 on ALTIX 350
>
> Dear Molpro users,
> I am trying to install parallel version of molpro 2002.6
> on SGI ALTIX 350 Itanium2 system with NUMAlink interconnect.
> I use ifort 9 and icc 9 Intel compiler. I succesfully compiled
> and linked serial version of Molpro, but I run into problems
> with parallel version.
> I am seeking advise on how  to properly compile Global Arrays
> and link it with Molpro installation. If I compile GA
> using TARGET=LINUX it compiles, but molpro linker fails
> with a lot of unresolved symbols, for example:
> IPO Error: unresolved : pbeginf_
>         Referenced in libmolpro.a(mpputil.o)
> IPO Error: unresolved : mitob_
>         Referenced in libmolpro.a(mpputil.o)
>         Referenced in libmolpro.a(globalop.o)
> IPO Error: unresolved : pend_
>         Referenced in libmolpro.a(mpputil.o)
> IPO Error: unresolved : nodeid_
>         Referenced in libmolpro.a(mpputil.o)
> IPO Error: unresolved : nnodes_
>         Referenced in libmolpro.a(mpputil.o)
> IPO Error: unresolved : mdtob_
>         Referenced in libmolpro.a(mpputil.o)
>         Referenced in libmolpro.a(globalop.o)
>         Referenced in libmolpro.a(getbs.o)
>
> /opt/GlobalArray3.3.3/g/lib/LINUX/libarmci.a(fence.o)(.text+0xaa1): In
> function `ARMCI_Barrier':
> : undefined reference to `SYNCH_'
> /opt/GlobalArray3.3.3/g/lib/LINUX/libarmci.a(message.o)(.text+0x15a2):
> In
> function `armci_msg_barrier':
> _sbuf/message.c:377: undefined reference to `SYNCH_'
> /opt/GlobalArray3.3.3/g/lib/LINUX/libarmci.a(message.o)(.text+0x15f2):
> In
> function `armci_msg_me':
> _sbuf/message.c:391: undefined reference to `NODEID_'
> /opt/GlobalArray3.3.3/g/lib/LINUX/libarmci.a(message.o)(.text+0x1652):
> In
> function `armci_msg_nproc':
> _sbuf/message.c:405: undefined reference to `NNODES_'
> /opt/GlobalArray3.3.3/g/lib/LINUX/libarmci.a(message.o)(.text+0x16b2):
> In
> function `armci_timer':
> _sbuf/message.c:419: undefined reference to `tcgtime_'
> /opt/GlobalArray3.3.3/g/lib/LINUX/libarmci.a(message.o)(.text+0x1752):
> In
> function `armci_msg_abort':
>
> and so on.
> I think my GA installation is not full and I will be glad to hear from
> experts in this matter.
> Thank you in advance
> Jacek
>
> Jacek A. Klos
> ---------------------------------
> Quantum Chemistry Laboratory     |
> Department of Chemistry          |
> University of Warsaw             |
> Pasteura 1 Street                |
> 02-093 Warsaw                    |
> Poland                           |
> (+4822)8220211 ext. 213          |
> e-mail: jakl at tiger.chem.uw.edu.pl|
> ---------------------------------
>
>
> Jacek A. Klos
> ---------------------------------
> Quantum Chemistry Laboratory     |
> Department of Chemistry          |
> University of Warsaw             |
> Pasteura 1 Street                |
> 02-093 Warsaw                    |
> Poland                           |
> (+4822)8220211 ext. 213          |
> e-mail: jakl at tiger.chem.uw.edu.pl|
> ---------------------------------
>

------------------------------------------------------------
Lisa M. Pérez, Ph.D.

Manager, Laboratory for Molecular Simulation

http://www.chem.tamu.edu/LMS/

Texas A&M University               mouse at mail.chem.tamu.edu 
Dept. of Chemistry                 Chemistry Bldg. RM. 2109
P.O. Box 30012                        office (979) 845-9384 
College Station, TX 77842-3012           fax (979) 845-2971 
------------------------------------------------------------