[molpro-user] torque/maui + molpro dies after a few seconds
Benj FitzPatrick
benjfitz at uchicago.edu
Sat Dec 2 17:43:42 GMT 2006
Hello,
I'm new to clustering, and I was hoping somebody would be able
to help me get molpro working with torque 2.1.6 and maui
3.2.6-p16. I looked in the molpro list archive, but this is
the only one I found (and I didn't have much luck with it).
http://www.molpro.net/molpro-user/archive/all/msg01639.html
I have a parallel molpro 2002.10 that will run for about 5
seconds and then it gets the below error in CCSD or mp2. When
I switch to molpro 2006.1 it will not even start the job, and
I get error #2. They are compiled with tcgmsg and ga4.0
(though 2002.10 may have ga3.4b). I also tried a serial
version of molpro and it dies in the same place as the
parallel 2002.10 version. I have included my submission
script for torque below.
Thanks in advance,
Benj FitzPatrick
University of Chicago
---error 1----
tmp =
/home/benjfitz/pdir//ab/molprop-2002_10-goto/aux/molprop_2002_10_i8_tcgmsg.exe.p
Creating: host=zifnab.uchicago.edu, user=benjfitz,
file=/ab/molprop-2002_10-goto/aux/molprop_2002_10_i8_tcgmsg.exe,
port=51298
1: interrupt(1)
Memory could be reduced to 0.6 Mword without degradation in
triples
Received signal 2 Interrupt
ERROR EXIT
CURRENT STACK: MAIN
---error 2---
tmp =
/home/benjfitz/pdir//ab/molprop-2006.1_27/aux/molprop_2006_1_i8_amd64_tcgmsg.exe.p
Creating: host=zifnab.uchicago.edu, user=benjfitz,
file=/ab/molprop-2006.1_27/aux/molprop_2006_1_i8_amd64_tcgmsg.exe,
port=60566
1: interrupt(1)
tmp =
/home/benjfitz/pdir//ab/molprop-2006.1_27/aux/molprop_2006_1_i8_amd64_tcgmsg.exe.p
Creating: host=zifnab.uchicago.edu, user=benjfitz,
file=/ab/molprop-2006.1_27/aux/molprop_2006_1_i8_amd64_tcgmsg.exe,
port=60566
1: interrupt(1)
---torque script---
#!/bin/sh
#PBS -N test
#PBS -q batch
#PBS -l nodes=1:ppn=1
#PBS -m abe
#PBS -M benjfitz at uchicago.edu
#PBS -d /cluster/benjfitz/pbs
#PBS -o /cluster/benjfitz/pbs/pbstest.out
#PBS -e /cluster/benjfitz/pbs/pbstest.err
export PBS_O_WORKDIR=/ab/benjfitz/pbs
cd $PBS_O_WORKDIR
export
LD_LIBRARY_PATH="/opt/compiler_libs/pathscale/lib/2.5:/opt/compiler_libs/pathscale/lib/2.5/32"
export TMPDIR=/scratch/benjfitz
export TMPDIR4=/initio/scratch/benjfitz
np=1
touch /ab/nodes
echo "" >/ab/nodes
for ((x=1;x<=np;x++))
do
echo "$HOSTNAME" >>/ab/nodes
done
export PBS_NODEFILE="/ab/nodes"
/ab/molprop-2006.1_27/molpro --mpirun-machinefile
$PBS_NODEFILE <./molprotest.inp &>./molprotest_112106.out &
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