[molpro-user] CCSD error
tapang at barc.gov.in
tapang at barc.gov.in
Wed Jan 24 04:20:27 GMT 2007
Dear MOLPRO-Users,
We trying to run MOLPRO (retreived from binary mpp RMP file)in our linux
clusters(distributed memory structure) with the following command:
/usr/local/bin/molpro -d /scratch/ -G 400000000 -n 4 --mpirun-machinefile \
nodefile -N "user1:node01:2,user1:node02:2" file.com &
Is this command is OK for running MOLPRO for this kind of clusters?
We are facing problem in running this. If we run single point ccsd(T) or QCISD
(T), then it is ok for small molecule. However, in geometry optimization run
(even for samll system)it is not even completing one step. Ours is a intel
xeon clusters.
Part of the output is given below and error as well as input file also given
below:
--------------------------------------------------------------
ARMCI configured for 2 cluster nodes. Network protocol is 'TCP/IP Sockets'.
MPP nodes nproc
ameya056.compune 2
ameya058.compune 2
ga_uses_ma=false, calling ma_init with nominal heap.
GA-space will be limited to 400.0 MW (determined by -G option)
Primary working directories: /scratch/
Secondary working directories: /scratch/
CPU=P4 3600.323:3600.323 MHz
Using default tuning parameters for linux_unknown
MPP tuning parameters: Latency= 0 Microseconds, Broadcast speed= 0
MB/sec
default implementation of scratch files=ga
--------------------------------------------------------------
Sometime job is just stuck after few minutes, CPU's are running but no output
even after waiting 2-3 days, although for completion of one step it should
take maximum 30 mins. Sometimes it is giving following error:
----------------error-----------------------------------------
6: snd_remote: writing message to socket 200599999 (0xbf4e9bf).
system error message: Connection reset by peer
7:SigIntHandler: interrupt signal was caught: 2
Last System Error Message from Task 7:: No such file or directory
7: ARMCI aborting 2 (0x2).
system error message: No such file or directory
----------------------------------------------------------------
Would you please help us in fixing the problem.
With thanks
Tapan Ghanty
--------------------------------------------------------------------
INPUT FILE
! bench/hbef.com $Revision: 2006.0 $
***,HBeF big basis
memory,800,m
file,1,/scratch/bau3_qcisd1.int
file,2,/scratch/bau3_qcisd1.wfu,new
include bench/4/timing
jobname='bau3_qcisd1'
mpptim_save='bau3_qcisd1.dat'
gprint,cpu
geomtyp=xyz
geometry={
4
CCSD(T) calculations
ATOM1 0.0000000000 0.0000000000 0.0000000000
ATOM2 -0.9975449283 1.7277984986 0.0000000000
ATOM3 -0.9975449283 -1.7277984986 0.0000000000
ATOM4 1.9950898565 0.0000000000 0.0000000000
}
gthresh,energy=1.d-6
basis={
ECP,ATOM2,ECP60MDF,
basis,ATOM2,ECP60MDF
basis,ATOM1,AVTZ,
}
int
timing
hf;
timing
qcisd(t)
optg
timing
show,e
report
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