[molpro-user] MPPX version for SGI Altix
Sarah Wilsey
sarah.wilsey at imperial.ac.uk
Mon Feb 25 14:28:46 GMT 2008
Hi,
I have been trying to get the MPPX version of Molpro running on our
SGI Altix 4700. I have compiled it using the same options as I used
for the MPP version except using -mppx instead of -mpp. The code
compiles without any problems but when I run the job below, the
optimization works fine but the frequencies produced are completely
wrong. In addition to this, 2 and 4 processor jobs hang at the end
when they try to release the memory with the error message:
1:kr_malloc: kr_free: block not found in used list
2305843014037012096(0x200000011f7dfe80)
: 528350848
2:kr_malloc: kr_free: block not found in used list
2305843018197761664(0x20000002177dfe80)
: 394133120
Input file:
***, SiH2Si Z-Matrix
memory,32,m
gthresh,energy=1.d-10,thrgrad=1.d-10
basis=vdz
r1= 2.2145 ang
a1= 52.3 degree
r3= 1.2504 ang
geometry={Si1
Si2,Si1,r1
Q1,Si1,r1,Si2,60
Q2,Si1,0.5*r1,Si2,0,Q1,a1
H1,Q2,r3,Si1,90,Q1,a1
H2,Q2,r3,Si1,90,Q1,-a1}
mass,Si=27.976927,H=1.007825
mass,print
hf
ccsd(t)
optg,gradient=1.d-4
frequencies
Output file:
Frequencies dumped to record 5400.2
Gradient norm at reference geometry: 0.40953D+05
?WARNING: GRADIENT NORM NOT ZERO!
Normal Modes
1 A1 2 B1 3 B2 4 A1
Wavenumbers [cm-1] 10216314.71 12986883.78 23082412.29 24778924.17
Intensities [km/mol] 0.00 0.00 0.00 0.00
Intensities [relative] 0.00 0.00 0.00 0.00
SI1X1 0.00000 0.00000 -0.01997 0.00000
SI1Y1 -0.08781 -0.02473 0.00000 -0.01362
SI1Z1 -0.01863 -0.01671 0.00000 -0.00106
SI2X2 0.00000 0.00000 -0.01997 0.00000
SI2Y2 0.08781 -0.02473 0.00000 0.01362
SI2Z2 -0.01863 0.01671 0.00000 -0.00106
H1X3 -0.06989 0.00000 0.55439 0.70005
H1Y3 0.00000 0.68657 0.00000 0.00000
H1Z3 0.51726 0.00000 -0.42154 0.02934
H2X4 0.06989 0.00000 0.55439 -0.70005
H2Y4 0.00000 0.68657 0.00000 0.00000
H2Z4 0.51726 0.00000 0.42154 0.02934
The code is patched to patch level 149, compiled with intel/cc/
0.1.044 and intel/fc/9.1039, and linked to cmkl-8.1/ilp64 and ga-4-0-1.
I would be grateful if anyone could let me know if they have got this
to work on a similar architecture and if there are any other options
I could use when compiling the code which might help,
Many thanks,
Sarah Wilsey
------------------------------------------------------------------------
--------------
Dr Sarah Wilsey
EPSRC National Service for Computational Chemistry Software
Department of Chemistry
Imperial College
London SW7 2AZ
Phone: 020 7594 1220 Fax: 020 7594 5804
URL: http://www.nsccs.ac.uk
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