[molpro-user] Running molpro2008.1 in parallel doesn't work
Thierry Leininger
Thierry.Leininger at irsamc.ups-tlse.fr
Wed Mar 18 14:30:38 GMT 2009
Dear all,
I just installed the Molpro 2008.1 binary version
Version 2008.1 for architecture Linux/em64t, standard code, mpp (Patchlevel 5)
on two different Linux clusters but I can't have it run on several nodes
(either with the -N option or using pbs qsub command).
I can run it parallel on a single node even with several cpus.
When I launch it from the master, tasks are actually sent to the nodes, but
then they just sit there and do not progress (cpu time remains 0:00).
Version 2006 was running without any problem.
Below is what I get after I submit the job using
molpro -N leininge:node10:1,leininge:node11:1 H2O.in
or qsub.
I really can't figure out what is going on.
I tried various things around the
workaround: parallel M2008 stalls on startup under SuSE submitted by
Gershom (Jan)Martin to the mailing October 2008 but nothing helped.
Thank you in advance.
Thierry
==================================================
tmp
= /home/leininge/pdir//home/leininge/bin/molprop_2008_1_Linux_x86_64_i8.exe.p
Creating: host=node10, user=leininge,
file=/home/leininge/bin/molprop_2008_1_Linux_x86_64_i8.exe,
port=50165
/home/leininge/bin/molprop_2008_1_Linux_x86_64_i8.exe, len=53
-master, len=7
s10-theorie.lcar.ups-tlse.fr, len=28
50165, len=5
2, len=1
2, len=1
0, len=1
0, len=1
Creating: host=node11, user=leininge,
file=/home/leininge/bin/molprop_2008_1_Linux_x86_64_i8.exe,
port=50166
/home/leininge/bin/molprop_2008_1_Linux_x86_64_i8.exe, len=53
-master, len=7
s10-theorie.lcar.ups-tlse.fr, len=28
50166, len=5
2, len=1
2, len=1
1, len=1
1, len=1
ARMCI configured for 2 cluster nodes. Network protocol is 'TCP/IP Sockets'.
Primary working directories : /tmp/leininge
Secondary working directories : /tmp/leininge
Wavefunction directory : /home/leininge/wfu/
Main file repository : /tmp/leininge/
cpu : P4 2327.549 MHz
FC : /opt/intel/fce/10.1.008/bin/ifort
FCVERSION : 10.1
BLASLIB : -L/opt/intel/mkl/9.1/lib/em64t -lmkl_em64t -lguide -lpthread -openmp
id : leininge
MPP nodes nproc
node10.alineos.net 1
node11.alineos.net 1
ga_uses_ma=false, calling ma_init with nominal heap.
GA-space will be limited to 8.0 MW (determined by -G option)
MPP tuning parameters: Latency= 0 Microseconds, Broadcast speed= 0
MB/sec
default implementation of scratch files=ga
--
Prof. Thierry Leininger
Laboratoire de Chimie et Physique Quantiques
IRSAMC - Université Paul Sabatier
118, route de Narbonne
F-31062 Toulouse Cedex
Tél. +33 5 61 55 61 52
Fax +33 5 61 55 60 65
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