[molpro-user] dummy atom-symmetry problem in BSSE
sutay at itu.edu.tr
sutay at itu.edu.tr
Mon Nov 12 08:21:56 GMT 2012
Dear molpro users,
i am carrying out a naphtalene dimer calculation to find out the optimum
distance between the molecular planes. My input is as follows: (r is the
interplanar distance and my Z-matrix is fully symmetric)
***,naphtalene dimer
memory,600,m
b=0.71
r42=1.422
r54=1.377
rh1=1.09
rh2=1.09
a1=119.2
a2=120.5
a3=120.
a4=120.0
do i=60,120
r=i*0.1
geometry={angstrom;
q1
C1 1 b
q2 1 1.0 2 90.0
C2 2 r42 1 a1 3 0.0
C3 4 r54 2 a2 1 0.0
C4 1 b 3 90.0 2 180.0
C5 6 r42 1 a1 3 0.0
C6 7 r54 6 a2 1 0.0
C7 2 r42 1 a1 3 180.
C8 9 r54 2 a2 1 0.0
C9 6 r42 1 a1 3 180.
C10 11 r54 6 a2 1 0.0
H1 4 rh1 2 a3 1 180.0
H2 5 rh2 4 a4 2 180.0
H3 7 rh1 6 a3 1 180.0
H4 8 rh2 7 a4 6 180.0
H5 9 rh1 2 a3 1 180.0
H6 10 rh2 9 a4 2 180.0
H7 11 rh1 6 a3 1 180.0
H8 12 rh2 11 a4 6 180.0
q3 1 r 3 90.0 2 90.0
C11 21 b 1 90.0 3 90.0
q4 21 1.0 1 90.0 3 0.0
C12 22 r42 21 a1 23 0.0
C13 24 r54 22 a2 21 0.0
C14 21 b 23 90. 22 180.0
C15 26 r42 21 a1 23 0.0
C16 27 r54 26 a2 21 0.0
C17 22 r42 21 a1 23 180.
C18 29 r54 22 a2 21 0.0
C19 26 r42 21 a1 23 180.
C20 31 r54 26 a2 21 0.0
H9 24 rh1 22 a3 21 180.0
H10 25 rh2 24 a4 22 180.0
H11 27 rh1 26 a3 21 180.0
H12 28 rh2 27 a4 26 180.0
H13 29 rh1 22 a3 21 180.0
H14 30 rh2 29 a4 22 180.0
H15 31 rh1 26 a3 21 180.0
H16 32 rh2 31 a4 26 180.0
}
basis={
H=vdz ! Use
basis vdz for H
C=avdz ! Use
basis avdz for C
}
! --- dimer ---
r(i)=r
hf
ccsd(t),nocheck
cc1(i)=energy
eper1(i)=EMP2
e_dim_scs(i)=EMP2_SCS
! --- monomerA-CP ---
dummy,c1,c2,c3,c4,c5,c6,c7,c8,c9,c10
dummy,h1,h2,h3,h4,h5,h6,h7,h8
hf
ccsd(t),nocheck
eper2(i)=EMP2
cc2(i)=energy
e_mon1_scs(i)=EMP2_SCS
! --- monomerB-CP ---
dummy,c11,c12,c13,c14,c15,c16,c17,c18,c19,c20
dummy,h9,h10,h11,h12,h13,h14,h15,h16
hf
ccsd(t),nocheck
eper3(i)=EMP2
cc3(i)=energy
e_mon2_SCS(i)=EMP2_SCS
e0(i)=(eper1(i)-eper2(i)-eper3(i))*627.5098
escs(i)=(e_dim_scs(i)-e_mon1_scs(i)-e_mon2_scs(i))*627.5098
ecc(i)=(cc1(i)-cc2(i)-cc3(i))*627.5098
enddo
table,r,e0,escs,ecc
format,'f8.2,f10.4,f10.4,f10.4'
i searched the X-ray informations and the interplanar distance is higher
than 5 Angstrom. But the job is failed everytime i try and it gives the
error as follows:
Symmetry equivalent atom C1 not found in list of dummies
Symmetry equivalent atom C4 not found in list of dummies
Symmetry equivalent atom C2 not found in list of dummies
Symmetry equivalent atom C5 not found in list of dummies
Symmetry equivalent atom C7 not found in list of dummies
Symmetry equivalent atom C9 not found in list of dummies
Symmetry equivalent atom C3 not found in list of dummies
Symmetry equivalent atom C6 not found in list of dummies
Symmetry equivalent atom C8 not found in list of dummies
Symmetry equivalent atom C10 not found in list of dummies
Symmetry equivalent atom H1 not found in list of dummies
Symmetry equivalent atom H3 not found in list of dummies
Symmetry equivalent atom H5 not found in list of dummies
Symmetry equivalent atom H7 not found in list of dummies
Symmetry equivalent atom H2 not found in list of dummies
Symmetry equivalent atom H4 not found in list of dummies
Symmetry equivalent atom H6 not found in list of dummies
Symmetry equivalent atom H8 not found in list of dummies
? Error
? Symmetry inconsistent with dummy atoms
? The problem occurs in readum
Do you have any suggestion? What should i do?
regards
Berkay
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